Index

_

__init__() (sim.Simulator method)

A

add_legend() (in module Simulator) add_plot_infectious() (in module Simulator)

add_plot_susceptible() (in module Simulator) add_title() (in module Simulator)

C

citation() (in module Simulator)

G

genealogy() (in module Simulator)

get_data_infectious() (in module Simulator) get_data_susceptible() (in module Simulator)

O

output_chain_events() (in module Simulator) output_epidemiology_timelines() (in module Simulator) output_migrations() (in module Simulator)

output_mutations() (in module Simulator) output_newick() (in module Simulator) output_sample_data() (in module Simulator) output_state() (in module Simulator)

P

plot() (in module Simulator) plot_infectious() (in module Simulator) print_all() (in module Simulator)

print_basic_parameters() (in module Simulator) print_immunity_model() (in module Simulator) print_populations() (in module Simulator)

S

set_chain_events() (in module Simulator) set_contact_density() (in module Simulator) set_immunity_transition() (in module Simulator) set_migration_probability() (in module Simulator) set_mutation_rate() (in module Simulator) set_npi() (in module Simulator) set_population_size() (in module Simulator)

set_recovery_rate() (in module Simulator) set_sampling_multiplier() (in module Simulator) set_sampling_rate() (in module Simulator) set_susceptibility() (in module Simulator) set_susceptibility_type() (in module Simulator) set_transmission_rate() (in module Simulator) simulate() (in module Simulator) Simulator (class in sim)